As per your clarification that you simply mean the jumper is missing, to my knowledge on the majority of modern motherboards, this simply doesn't matter. The two pins that you bridge to trip the RTC clear are wired, but the third pin doesn't really do anything and is simply there so that the jumper can remain in the machine.

That said, for the issues you're having it couldn't hurt to reset the CMOS and then immediately do a clean flash of the newest BIOS revision and reset your settings from scratch. In the absence of a jumper, you can simply bridge the two pins for a few seconds with a screwdriver or pocketknife.

Answer from Shinrai on Stack Exchange
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AnandTech
forums.anandtech.com › home › hardware and technology › computer building
ASUS chassis intrusion! | AnandTech Forums: Technology, Hardware, Software, and Deals
January 14, 2013 - You want a jumper on pins 1&2 on the CLRTC header and a jumper on pins 3&4 for the Chassis Intrusion header...
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Chron.com
smallbusiness.chron.com › clear-cmos-asus-motherboard-53182.html
How to Clear CMOS on an ASUS Motherboard | Small Business - Chron.com
February 12, 2019 - The ASUS motherboard jumper abbreviation CLRTC stands for "clear real-time clock," since it's used to clear the RTC or CMOS.
Discussions

Green LED, no boot, read troubleshoot - help?
For some reason, that small blue piece, if I put it on the two right pins of the "Chassis CLRTC" (what is that??) header(that the right term? male pins on the motherboard), everything starts spinning as if I turned it on if I take it off right after .. if I leave it in, like push it in all ... More on forums.tomshardware.com
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August 14, 2013
Help to pinpoint CLRTC of Asus TUF Gaming B850M Plus Wifi
it's the two on the left in that top grouping of four (2 for clrtc, 2 for chassis) you short them is there some reason you're trying to clear the cmos? or is it just a mobo with a cmos reset button on the rear io or something More on reddit.com
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August 27, 2025
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Reddit
reddit.com › r/asus › bios reset - locating clrtc on a b450m-a
r/ASUS on Reddit: BIOS RESET - LOCATING CLRTC ON A B450M-A
October 17, 2022 - Could the GPU be covering the pines? I have looked to all manuals and the graphic shows 4 SATAG while mine has only two with cables (or jumpers idk sorry for the ignorance)? And really can’t see the inscription CLRTC on that exact spot.
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StudyLib
studylib.net › engineering & technology › computer science
Motherboard Pin Definitions - E11133 Guide
March 24, 2025 - The signal is then generated as a chassis intrusion event. +5VSB_MB 3. 1-3 2Jumpers 1. Clear RTC RAM (3-pin CLRTC) This jumper allows you to clear the Real Time Clock (RTC) RAM in CMOS.
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Amazon
images-eu.ssl-images-amazon.com › images › I › A1P8YDWZ0rS.pdf pdf
Motherboard Pin Definition 1 E11133 Revised Edition v2 December 2015
CLRTC · +3V_BAT · GND · PIN 1 · PIN 1 · VBAT · GND · BATT_CON · +5VSB_MB · Chassis Signal · GND · CHASSIS · 1-4 · Motherboard Pin Definition · 2 · Jumpers · 1. Clear RTC RAM (3-pin CLRTC) This jumper allows you to clear the Real Time Clock (RTC) RAM in CMOS.
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Quora
quora.com › What-is-CLRTC
What is CLRTC? - Quora
Answer (1 of 3): The ASUS motherboard jumper abbreviation CLRTC stands for "clear real-time clock," since it's used to clear the RTC or CMOS.
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Puppy Linux Discussion Forum
oldforum.puppylinux.com › board index › house training › users ( for the regulars )
Asus chassis intrusion - solved - (old)Puppy Linux Discussion Forum
What seems to have worked is removing the jumper from clrtc for several seconds and putting it back in place. It is possibly more complex a sequence, but now that it's working I can't have a chance to try again, until the 'chassis intrusion' gets triggered again.
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bit-tech.net
forums.bit-tech.net › index.php
Random question - how does CLRTC/CMOS reset jumper ...
bit-tech.net's discussion forum. Dedicated to pc case mods, computer hardware, overclocking and gaming.
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Tom's Hardware Forum
forums.tomshardware.com › home › motherboards
Green LED, no boot, read troubleshoot - help? | Tom's Hardware Forum
August 14, 2013 - For some reason, that small blue piece, if I put it on the two right pins of the "Chassis CLRTC" (what is that??) header(that the right term? male pins on the motherboard), everything starts spinning as if I turned it on if I take it off right after .. if I leave it in, like push it in all the way, everything turns off.
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YouTube
youtube.com › tech brother
How To Reset CLRTC Pin In Mother Board - YouTube
How To Reset CLRTC Pin In Mother Board
Published   July 31, 2020
Views   489
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Theretroweb
theretroweb.com › motherboard › manual › e3959-m3n78-vm-v2-6827c0908b1ad124142343.pdf pdf
Motherboard M3N78-VM
CLRTC · ATX12V · R · SPDIF_OUT · M3N78-VM · LPT · KB_USB56 · VGA_DVI · USB34_ESATA · LAN1_USB12 · AUDIO · HDMI · SPDIF_O2 · CHA_FAN · PWR_FAN · FLOPPY · CD · TPM · CHASSIS · ASUS M3N78-VM · 1- · R · M3N78-VM · Do not overtighten the screws!
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ManualsLib
manualslib.com › brands › asus manuals › motherboard › h61m-pro › user manual
Jumpers; Clear Rtc Ram (3-Pin Clrtc) - Asus H61M-PRO User Manual [Page 19] | ManualsLib
February 4, 2014 - 1. Clear Rtc Ram (3-Pin Clrtc) This Jumper Allows You To Clear The Real Time Clock (Rtc) Ram In Cmos. You Can Clear The Cmos Memory Of Date, Time, And System Setup Parameters By Erasing The Cmos Rtc Ram Data.
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ManualsLib
manualslib.com › brands › asus manuals › motherboard › motherboard p5pl2 › user manual
Clear Rtc Ram (Clrtc); To Erase Rtc Ram; Jumpers - Asus Motherboard P5PL2 User Manual [Page 39] | ManualsLib
April 29, 2012 - This Jumper Allows You To Clear The Real Time Clock (Rtc) Ram In Cmos. You Can Clear The Cmos Memory Of Date, Time, And System Setup Parameters By Erasing The Cmos Rtc Ram Data. The Onboard Button...
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Theretroweb
theretroweb.com › motherboard › manual › qe3662-p5kpl-cm-qsg-648080fc3b13b978844782.pdf pdf
Quick Start Guide
CLRTC · CHASSIS · USB56 · F_PANEL · 8Mb · BIOS · SPDIF_OUT · SPEAKER · CD · AAFP · PCI2 · PCI1 · PCIEX16 · PCIEX1_1 · VT1708B · PS2_USBPW · CR2032 3V · Lithium Cell · CMOS Power · ATX12V · PARALLEL PORT · VGA · COM1 · PS/2KBMS · T: Mouse ·
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ManualsLib
manualslib.com › brands › asus manuals › motherboard › p8z68-v lx › user manual
Jumpers; Clear Rtc Ram (3-Pin Clrtc) - Asus P8Z68-V LX User Manual [Page 38] | ManualsLib
March 8, 2013 - 1. Clear Rtc Ram (3-Pin Clrtc) This Jumper Allows You To Clear The Real Time Clock (Rtc) Ram In Cmos. You Can Clear The Cmos Memory Of Date, Time, And System Setup Parameters By Erasing The Cmos Rtc Ram Data.
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B&H Photo Video
bhphotovideo.com › lit_files › 428645.pdf pdf
Motherboard PRIME Z390-A
The 2-pin or 3-1 pin connector is for the system power LED. Connect the chassis
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YouTube
m.youtube.com › watch
Reset your BIOS settings / Clear CMOS
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Published   December 27, 2021