First create a mapper :

import com.fasterxml.jackson.databind.ObjectMapper;// in play 2.3
ObjectMapper mapper = new ObjectMapper();

As Array:

MyClass[] myObjects = mapper.readValue(json, MyClass[].class);

As List:

List<MyClass> myObjects = mapper.readValue(jsonInput, new TypeReference<List<MyClass>>(){});

Another way to specify the List type:

List<MyClass> myObjects = mapper.readValue(jsonInput, mapper.getTypeFactory().constructCollectionType(List.class, MyClass.class));

First, define POJOs for mapping your request object:

public class RequestObj implements Serializable{

    private List<Long> ids;

    private UsuarioDTO user;

    /* getters and setters here */

}

public class UsuarioDTO implements Serializable{

    private String name;
    private String email;

    /* getters and setters here */

}

And then modify your endpoint:

@PostMapping(value = "/sendToOficial")
public ResponseEntity<?> sendToOficial(@RequestBody RequestObj payload) {

In this way you also do not need to use an ObjectMapper. Just call payload.getIds().

Consider also that in this way if payload changes you'll need only to change RequestObj definition, while using ObjectMapper would force you to update also your endpoint in an important way. It's better and safer to separate payload representation from control logic.

The problem is not in your code but in your json:

{"Compemployes":[{"id":1001,"name":"jhon"}, {"id":1002,"name":"jhon"}]}

this represents an object which contains a property Compemployes which is a list of Employee. In that case you should create that object like:

class EmployeList{
    private List<Employe> compemployes;
    (with getter an setter)
}

and to deserialize the json simply do:

EmployeList employeList = mapper.readValue(jsonString,EmployeList.class);

If your json should directly represent a list of employees it should look like:

[{"id":1001,"name":"jhon"}, {"id":1002,"name":"jhon"}]

Last remark:

List<Employee> list2 = mapper.readValue(jsonString, 
TypeFactory.collectionType(List.class, Employee.class));

TypeFactory.collectionType is deprecated you should now use something like:

List<Employee> list = mapper.readValue(jsonString,
TypeFactory.defaultInstance().constructCollectionType(List.class,  
   Employee.class));

You are asking Jackson to parse a StudentList. Tell it to parse a List (of students) instead. Since List is generic you will typically use a TypeReference

List<Student> participantJsonList = mapper.readValue(jsonString, new TypeReference<List<Student>>(){});