Compare with name and update that json element.

Resource resource = new ClassPathResource("gateway-fields.json");  //read from json file
      JsonFactory jsonFactory = new JsonFactory();
      ObjectMapper objectMapper = new ObjectMapper(jsonFactory);

      JsonNode arrayNode = objectMapper.readTree(resource.getFile()).get("fields");

      if (arrayNode.isArray()) {
          for (JsonNode jsonNode : arrayNode) {
              String nameFieldNode = jsonNode.get("name").asText();    
              if("RefNo".equals(nameFieldNode)){
                     ((ObjectNode)jsonNode).put("name", "1112");
              }
          }
      }

Yes, the Jackson manual parser design is quite different from other libraries. In particular, you will notice that JsonNode has most of the functions that you would typically associate with array nodes from other APIs. As such, you do not need to cast to an ArrayNode to use. Here's an example:

JSON:

{
    "objects" : ["One", "Two", "Three"]
}

Code:

final String json = "{\"objects\" : [\"One\", \"Two\", \"Three\"]}";

final JsonNode arrNode = new ObjectMapper().readTree(json).get("objects");
if (arrNode.isArray()) {
    for (final JsonNode objNode : arrNode) {
        System.out.println(objNode);
    }
}

Output:

"One"
"Two"
"Three"

Note the use of isArray to verify that the node is actually an array before iterating. The check is not necessary if you are absolutely confident in your data structure, but it's available should you need it (and this is no different from most other JSON libraries).

This will work for you :

ObjectMapper mapper = new ObjectMapper();
JsonNode root = mapper.readTree(json);
Map<String, String> map = new HashMap<>();
addKeys("", root, map, new ArrayList<>());

map.entrySet()
     .forEach(System.out::println);

private void addKeys(String currentPath, JsonNode jsonNode, Map<String, String> map, List<Integer> suffix) {
    if (jsonNode.isObject()) {
        ObjectNode objectNode = (ObjectNode) jsonNode;
        Iterator<Map.Entry<String, JsonNode>> iter = objectNode.fields();
        String pathPrefix = currentPath.isEmpty() ? "" : currentPath + "-";

        while (iter.hasNext()) {
            Map.Entry<String, JsonNode> entry = iter.next();
            addKeys(pathPrefix + entry.getKey(), entry.getValue(), map, suffix);
        }
    } else if (jsonNode.isArray()) {
        ArrayNode arrayNode = (ArrayNode) jsonNode;

        for (int i = 0; i < arrayNode.size(); i++) {
            suffix.add(i + 1);
            addKeys(currentPath, arrayNode.get(i), map, suffix);

            if (i + 1 <arrayNode.size()){
                suffix.remove(arrayNode.size() - 1);
            }
        }

    } else if (jsonNode.isValueNode()) {
        if (currentPath.contains("-")) {
            for (int i = 0; i < suffix.size(); i++) {
                currentPath += "-" + suffix.get(i);
            }

            suffix = new ArrayList<>();
        }

        ValueNode valueNode = (ValueNode) jsonNode;
        map.put(currentPath, valueNode.asText());
    }
}

For the json you gave the output will be :

name-items-name-1-2=2nditem
name-items-name-1-1=firstitem
name-items-stock-1-1=12
name-first-1=John
name-items-stock-1-2=23
company=John Company
name-last-1=Doe

You can use IteratorUtils to create a List from the getElements Iterator:

#[org.apache.commons.collections.IteratorUtils.toList(payload.get('MyArrayNode').elements)]

ArrayNode implements Iterable. Iterable has a spliterator() method. You can create a sequential Stream from a Spliterator using

ArrayNode arrayNode = (ArrayNode) json.get("xyz");
StreamSupport.stream(arrayNode.spliterator(), false)