As per your clarification that you simply mean the jumper is missing, to my knowledge on the majority of modern motherboards, this simply doesn't matter. The two pins that you bridge to trip the RTC clear are wired, but the third pin doesn't really do anything and is simply there so that the jumper can remain in the machine.

That said, for the issues you're having it couldn't hurt to reset the CMOS and then immediately do a clean flash of the newest BIOS revision and reset your settings from scratch. In the absence of a jumper, you can simply bridge the two pins for a few seconds with a screwdriver or pocketknife.

Answer from Shinrai on Stack Exchange
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Asus
asus.com › us › support › faq › 1040820
[Motherboard] How to Clear CMOS | Official Support | ASUS USA
Part 2: CLRTC Pin · Power off the PC and remove the power cord. Use a metal object or jumper cap to short-circuit the 2 Pin for about 5~10 seconds (at this time, that is, to clear the Real Time Clock (RTC) Random Access Memory). Plug in the power cord and turn on the PC.
Discussions

Question on what pressing the CMOS button actually does. - PCPartPicker
Question on what pressing the CMOS button actually does. More on pcpartpicker.com
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Question on what pressing the CMOS button actually does.
My motherboard: Asus Dark Hero ... defaults) b. At the back of the motherboard, pressing , Clear CMOS" button c. On the motherboard, using the (CLRTC) jumper d.... More on forums.tomshardware.com
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18
1
February 17, 2021
My ASUS ROG STRIX B450-F GAMING Motherboard HAS A PROBLEM
Clear CMOS using these steps: Unplug the PC (PSU). Then press the Power Button for at least 30 seconds. Use a flat headed screwdriver to short the CLR CMOS (CLRTC) Jumper (Touch both jumper pins with the screwdriver) for at least 15 seconds. Plug the PC back in. More on forums.tomshardware.com
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4
0
June 20, 2020
Clrtc - Republic of Gamers Forum - 730503
The manual (page1-11 of Rog Strix X299 Gaming-E states: "Except when clearing the RTC RAM, never remove the cap on CLRTC jumper default position. Removing the cap will cause system boot failure." Well, my board has no cap on CLRTC jumper and never has [and thus according to the manual should ... More on rog-forum.asus.com
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March 7, 2024
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Chron.com
smallbusiness.chron.com › clear-cmos-asus-motherboard-53182.html
How to Clear CMOS on an ASUS Motherboard | Small Business - Chron.com
February 12, 2019 - The ASUS motherboard jumper abbreviation CLRTC stands for "clear real-time clock," since it's used to clear the RTC or CMOS.
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Velocity Micro
velocitymicro.com › SupportArticles › Article_619.php
PC Support | Velocity Micro
All motherboards have small groups of pins sticking out called jumpers that serve various functions. There is a special pair of jumpers that are dedicated to clearing the CMOS by connecting the two with a screwdriver. On most boards it will be labeled “CLRTC” or “clear real time clock”, ...
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ManualsLib
manualslib.com › brands › asus manuals › asus motherboard manuals › asus m2n green manuals › asus m2n green user manual
Jumper; Clear Rtc Ram (Clrtc); Jumpers - Asus M2N GREEN User Manual [Page 43] | ManualsLib
December 11, 2012 - Clear Rtc Ram (Clrtc) This Jumper Allows You To Clear The Real Time Clock (Rtc) Ram In Cmos. You Can Clear The Cmos Memory Of Date, Time, And System Setup Parameters By Erasing The Cmos Rtc Ram Data.
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Transource
support.transource.com › helpdesk › index.php
Clearing BIOS settings - H110M
2) Using this diagram, locate the CLRTC jumper pins. Note: You may need to remove the graphics card if one is installed. 3) Use a screwdriver, paperclip, or anything metallic and touch across the two pins for about 20 seconds. When performing this step, do not bend one pin into the other.
Find elsewhere
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Overclock.net
overclock.net › home › forums › intel › intel motherboards
CLRTC problem *Help please* | Overclock.net
January 25, 2011 - Let jumper sit for 30 secs reset and boot. 2) remove bios batter for 5 minutes (power unplugged) put back and power up.
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Northern Micro
northernmicro.com › spirit-manuals › spirit-x399-as-user-manual › Jumpers.htm
Jumpers
This jumper allows you to clear the Real Time Clock (RTC) RAM in CMOS. You can clear the CMOS memory of date, time and setup parameters by erasing the CMOS RTC RAM data.
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bit-tech.net
forums.bit-tech.net › index.php
how does CLRTC/CMOS reset jumper work?
August 16, 2020 - bit-tech.net's discussion forum. Dedicated to pc case mods, computer hardware, overclocking and gaming.
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PCPartPicker
pcpartpicker.com › forums › topic › 390591-question-on-what-pressing-the-cmos-button-actually-does
Question on what pressing the CMOS button actually does. - PCPartPicker
c. On the motherboard, using the (CLRTC) jumper · This is an alternative to the battery. Behaves differently in some boards. d. On the motherboard, reseating (not a typo, for non-english speakers) the CMOS battery · Most common way to reset CMOS to default settings (current BIOS only).
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Tom's Hardware Forum
forums.tomshardware.com › home › motherboards
[SOLVED] - Question on what pressing the CMOS button actually does. | Tom's Hardware Forum
February 17, 2021 - My motherboard: Asus Dark Hero Hey guys, been searching online and got multiple answers on what the cmos button does when you press it/hold it down 1. It resets your motherboard setting to default settings on your CURRENT bios 2. It resets your motherboard bios version to the FACTORY version ...
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Tom's Hardware Forum
forums.tomshardware.com › home › motherboards
[SOLVED] - My ASUS ROG STRIX B450-F GAMING Motherboard HAS A PROBLEM | Tom's Hardware Forum
June 20, 2020 - Clear CMOS using these steps: Unplug the PC (PSU). Then press the Power Button for at least 30 seconds. Use a flat headed screwdriver to short the CLR CMOS (CLRTC) Jumper (Touch both jumper pins with the screwdriver) for at least 15 seconds. Plug the PC back in.
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Quora
quora.com › What-is-CLRTC
What is CLRTC? - Quora
Answer (1 of 3): The ASUS motherboard jumper abbreviation CLRTC stands for "clear real-time clock," since it's used to clear the RTC or CMOS.
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Asus
rog-forum.asus.com › t5 › promotions-general-discussions › clrtc › td-p › 730503
Clrtc - Republic of Gamers Forum - 730503
March 7, 2024 - And there is still no cap on the CLRTC jumper, never has been. My questions re CLRTC: It seems to me that the manual for this board is incorrect since the board did not come with a jumper and it boots. Should I have a jumper on pins 1&2? I have asked Asus and am awaiting an answer.