You should install the development support files for zlib, try:
sudo apt-get install libz-dev
Other package names: zlib1g-dev.
If you've already zlib library, make sure you're compiling your code sources with -lz. See: missing zlib.h in ubuntu.
Top answer 1 of 3
186
You should install the development support files for zlib, try:
sudo apt-get install libz-dev
Other package names: zlib1g-dev.
If you've already zlib library, make sure you're compiling your code sources with -lz. See: missing zlib.h in ubuntu.
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Install zlib from it's source, solve my similar error. Download last version from this then:
configure
make -j4
make install
GitHub
github.com › dfguan › asset › issues › 5
zlib.h: No such file or directory · Issue #5 · dfguan/asset
December 12, 2020 - zlib.h: No such file or directory#5 · Copy link · zhoudreames · opened · on Dec 12, 2020 · Issue body actions · I got a error when I have runned make，below this error. gcc -g -Wall -D VERBOSE -O2 -D PRINT_COVERAGE -c -o paf.o paf.c paf.c:1:10: fatal error: zlib.h: No such file or directory #include <zlib.h> ^~~~~~~~ compilation terminated.
Author dfguan
zlib.h: No such file or directory error on Windows - Nim forum
C:UsersAndrea.nimblepkgszip-0.3.1zipprivatelibzip_all.c:34:10: fatal error: zlib.h: No such file or directory More on forum.nim-lang.org
C1083: Cannot open include file: 'zlib.h': No such file or directory
Hello, I have a problem: when I compile the program I was given, there is an error: 10:20:45: The "C:\bin\Qt\Tools\QtCreator\bin\jom.exe" process ended with... More on forum.qt.io
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0
September 30, 2020fatal error: zlib.h: No such file or directory
Hello, I have git clone https://........ and it is successful but when I run make && make install ,there are some problems linux@linux-virtual-machine:~/proovread$ make && make inst... More on github.com
2
September 25, 2019[question] fatal error: zlib.h: No such file or directory | #include <zlib.h>
There was an error while loading. Please reload this page · I add the requirement "zlib/1.2.13" to conanfile.py and find_package(ZLIB) to CMakeLists.txt but my cpp file is not compiled More on github.com
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May 13, 2023GitHub
github.com › tidyverse › haven › issues › 656
Installation error using install.packages("tidyverse"): "fatal error: zlib.h: No such file or directory" · Issue #656 · tidyverse/haven
January 18, 2022 - gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG -I'/home/pradeep/R/x86_64-pc-linux-gnu-library/4.1/cpp11/include' -Ireadstat -DHAVE_ZLIB -fpic -g -O2 -fdebug-prefix-map=/build/r-base-i2PIHO/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readstat/spss/readstat_zsav_compress.c -o readstat/spss/readstat_zsav_compress.o readstat/spss/readstat_zsav_compress.c:2:10: fatal error: zlib.h: No such file or directory 2 | #include <zlib.h> | ^~~~~~~~ compilation terminated.
Author tidyverse
TechOverflow
techoverflow.net › 2022 › 04 › 06 › how-to-fix-r-package-installation-fatal-error-zlib-h-no-such-file-or-directory
How to fix R package installation fatal error: zlib.h: No such file or directory | TechOverflow
April 6, 2022 - io_utils.c:16:10: fatal error: zlib.h: No such file or directory 16 | #include <zlib.h> | ^~~~~~~~ compilation terminated.
Ask Ubuntu
askubuntu.com › questions › 1124866 › ubuntu-bionic-18-04-fatal-error-zlib-h-no-such-file-or-directory-include
compiling - Ubuntu Bionic 18.04 -- fatal error: zlib.h: No such file or directory #include <zlib.h> - Ask Ubuntu
March 11, 2019 - So it looks like you have an anaconda3 toolchain that is taking over the build process (preventing the regular "system" toolchain from running). Unless that's intentional, I suggest you examine your ~/.bashrc and (at least temporarily) comment ...
Nim Forum
forum.nim-lang.org › t › 8861
zlib.h: No such file or directory error on Windows - Nim forum
Essentially you need to install zlib and then use passC/passL with the correct path to zlib so that Nim can find zlib.h. ... It seems that zip/zipfiles is just a wrapper of a C library, so you must have the .h and the .dll file installed to use it. You may use a pure library instead. Such as zippy.
Top answer 1 of 2
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Due to this zlib.h file that is not found, the installation fails. I'm working in rstudio hosted from a docker container based on the rocker/rstudio:4.0.5 (newer versions like 4.1.1 throw the same error). Installing zlib by running sudo apt-get install zlib1g in the docker container does not solve the problem, as zlib1g is already installed with the newest version. · If you are extending a rocker/rstudio image you should install the development version of some libraries (only they contain the header files which are needed to build the R-packages) and two additional libraries: · apt-get install -y \ · libxml2 \ · libxt6 \ · zlib1g-dev \ · libbz2-dev \ · liblzma-dev \ · libpcre3-dev \ · libicu-dev \ · libjpeg-dev \ · libpng-dev \ · libxml2-dev \ · libglpk-dev
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You're not showing how you're installing packages. I hope you're using BiocManager::install() which is the only safe way to install Bioconductor packages. · Using R 4.0.5 means BiocManager::install() will pick up Bioconductor 3.12, which is old and no longer supported. The current version is BioC 3.14 and requires R 4.1.2. · If you're into Docker containers, why not use the container that we provide? https://bioconductor.org/help/docker/ · H.
SvennD
svennd.be › fatal-error-zlib-h-no-such-file-or-directory
fatal error: zlib.h: No such file or directory - SvennD
May 7, 2018 - While compiling minimap 2 on Centos 7, I got his annoying error : fatal error: zlib.h: No such file or directory Missing dependency ! I wish some tool would help out and tell you, what library I was missing, so I could stop making these posts. As to the solution : yum install zlib-devel for debian : apt-get install libz-dev
GitHub
github.com › BioInf-Wuerzburg › proovread › issues › 145
fatal error: zlib.h: No such file or directory · Issue #145 · BioInf-Wuerzburg/proovread
September 25, 2019 - linux@linux-virtual-machine:~/proovread$ make && make install git submodule init git submodule update --force Submodule path 'util/SeqChunker': checked out '676b02085c50d540223e5d648250e91c5749ccfe' Submodule path 'util/SeqFilter': checked out 'add13966d77f7d348368883213e156fc7034abc9' Submodule path 'util/bwa': checked out 'a0aadf47802aa45e5157562ee3f7099fe4b823af' cd util/bwa && make make[1]: Entering directory '/home/linux/proovread/util/bwa' gcc -c -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS utils.c -o utils.o utils.c:33:10: fatal error: zlib.h: No such file or directory #include <zlib.h> ^~~~~~~~ compilation terminated.
Author BioInf-Wuerzburg
GitHub
github.com › conan-io › conan › issues › 13886
[question] fatal error: zlib.h: No such file or directory | #include <zlib.h> · Issue #13886 · conan-io/conan
May 13, 2023 - I add the requirement "zlib/1.2.13" to conanfile.py and find_package(ZLIB) to CMakeLists.txt but my cpp file is not compiled. ... cmake_minimum_required(VERSION 3.15) project(hello CXX) add_library(hello src/hello.cpp) target_include_directories(hello PUBLIC include) find_package(ZLIB) target_link_libraries(hello PRIVATE ${ZLIB_LIBRARIES}) set_target_properties(hello PROPERTIES PUBLIC_HEADER "include/hello.h") install(TARGETS hello)
Author conan-io
Stack Overflow
stackoverflow.com › questions › 54337293 › fatal-error-zlib-h-no-such-file-or-directory-when-zlib-is-installed › 54340522
gcc - fatal error: zlib.h: No such file or directory when zlib is installed - Stack Overflow
> make make -C lib/utils libutils.a make[1]: Entering directory '/common/apps/biscuit/lib/utils' gcc -c -Wall -O2 wzvcf.c -o wzvcf.o In file included from wzvcf.h:29:0, from wzvcf.c:1: wzio.h:4:10: fatal error: zlib.h: No such file or directory #include <zlib.h> ^~~~~~~~ compilation terminated.
Google Groups
groups.google.com › g › snipersim › c › wkmEDJOefDQ
zlib.h not found
Stop. make: *** [/home/sparsh/... email addresses permission to view the original message ... You can try "sudo yum upgrade && sudo yum install -y zlib-devel" to install the zlib development header....
Stack Overflow
stackoverflow.com › questions › 23182819 › android-ndk-fatal-error-zlib-h-no-such-file-or-directory
Android NDK - fatal error: zlib.h: No such file or directory - Stack Overflow
July 9, 2016 - You're probably missing zlib header files, try installing libz-dev development package, e.g.
GitHub
github.com › dtrace4linux › linux › issues › 81
fatal error: zlib.h: No such file or directory · Issue #81 · dtrace4linux/linux
April 5, 2014 - I am getting fatal error: zlib.h: No such file or directory on make all step. Here is the a bit more detailed output BUILD_DIR=build-3.5.0-46-generic tools/build.pl build-3.5.0-46-generic `uname -m...
Author dtrace4linux
GitHub
github.com › go-vgo › robotgo › issues › 525
fatal error: zlib.h: No such file or directory · Issue #525 · go-vgo/robotgo
August 6, 2022 - fatal error: zlib.h: No such file or directory#525 · Copy link · Labels · question · qiuapeng921 · opened · on Aug 6, 2022 · Issue body actions · Robotgo version (or commit ref): Go version: Gcc version: Operating system and bit: Resolution: Can you reproduce the bug at Examples: Yes (provide example code) No ·
Author go-vgo
Stack Overflow
stackoverflow.com › questions › 66981977 › fatal-error-zlib-h-no-such-file-or-directory-when-install-r-package
fatal error: zlib.h: No such file or directory when install R package - Stack Overflow
April 7, 2021 - > BiocManager::install('Rsamtools') Bioconductor version 3.12 (BiocManager 1.30.12), ?BiocManager::install for help 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details replacement repositories: CRAN: https://cloud.r-project.org Bioconductor version 3.12 (BiocManager 1.30.12), R 4.0.4 (2021-02-15) Installing package(s) 'Rsamtools' also installing the dependency ‘Rhtslib’ trying URL 'https://bioconductor.org/packages/3.12/bioc/src/contrib/Rhtslib_1.22.0.tar.gz' Content type 'application/x-gzip' length 1472143 bytes (1.4 MB) ======================
GitHub
github.com › ZerBea › hcxtools › issues › 69
fatal error: zlib.h: No such file or directory · Issue #69 · ZerBea/hcxtools
September 14, 2018 - Running make when in the hcxtools directory I get an error Include/gzops.c:1:10: fatal error: zlib.h: No such file or directory #include <zlib.h>
Author ZerBea
Top answer 1 of 2
6
Seems compiler is not able to find the file in the includes path you mentioned.
First check if zconf.h file is available on your machine and get that location. If the file is available then just give the path of the file to the compiler using -I option.
INCLUDE = -I"<YourPath>" -I"./src/" -I"/usr/include/" -I"$(CODEBASE)/seqlib/src/libs/seqan-library-2.0.1/include" -I"$(CODEBASE)/seqlib/src/libs/libdivsufsort-2.0.1-64bit/" $(CODEBASE_SRC_FOLDERS)
If the file itself is missing, then you would need to install it
sudo apt-get install libz-dev
Based on information shared by @Knud Larsen :
The Ubuntu package name is zlib1g-dev from where you can get the missing file. /usr/include/zconf.h
https://packages.ubuntu.com/focal-updates/amd64/zlib1g-dev/filelist
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Just for future reference, what Altaf mentioned is correct. More than that, you can continue adding things that are not in the appropriate place exactly like this. Locate them and then add them manually.
If the makefile is not very big this will eventually be ok. It doesn't scale on the general case however, and maybe changing the makefile in a more radical way should be done.
Bioinformatics Answers
biostars.org › p › 414753
fwrite.c:10:49: fatal error: zlib.h: No such file or directory #include <zlib.h> // for compression to .gz
fwrite.c:10:49: fatal error: zlib.h: No such file or directory #include <zlib.h> // for compression to .gz 0