Recommended base image
As suggested in my comment, you could write a Dockerfile that looks like:
FROM python:3
RUN pip install --no-cache-dir --upgrade pip && \
pip install --no-cache-dir nibabel pydicom matplotlib pillow med2image
# Note: we had to merge the two "pip install" package lists here, otherwise
# the last "pip install" command in the OP may break dependency resolution…
CMD ["cat", "/etc/os-release"]
And the command example above could confirm at runtime (docker build --pull -t test . && docker run --rm -it test) that this image is based on the GNU/Linux distribution "Debian stable".
Generic Dockerfile template
Finally to give a comprehensive answer, note that a good practice regarding Python dependencies consists in specifying them in a declarative way in a dedicated text file (in alphabetical order, to ease review and update) so that for your example, you may want to write the following file:
requirements.txt
matplotlib
med2image
nibabel
pillow
pydicom
and use the following generic
Dockerfile
FROM python:3
WORKDIR /usr/src/app
COPY requirements.txt ./
RUN pip install --no-cache-dir --upgrade pip \
&& pip install --no-cache-dir -r requirements.txt
COPY . .
CMD ["python", "./your-daemon-or-script.py"]
To be more precise, this is the approach suggested in the documentation of the Docker official image python, §. How to use this image
Recommended base image
As suggested in my comment, you could write a Dockerfile that looks like:
FROM python:3
RUN pip install --no-cache-dir --upgrade pip && \
pip install --no-cache-dir nibabel pydicom matplotlib pillow med2image
# Note: we had to merge the two "pip install" package lists here, otherwise
# the last "pip install" command in the OP may break dependency resolution…
CMD ["cat", "/etc/os-release"]
And the command example above could confirm at runtime (docker build --pull -t test . && docker run --rm -it test) that this image is based on the GNU/Linux distribution "Debian stable".
Generic Dockerfile template
Finally to give a comprehensive answer, note that a good practice regarding Python dependencies consists in specifying them in a declarative way in a dedicated text file (in alphabetical order, to ease review and update) so that for your example, you may want to write the following file:
requirements.txt
matplotlib
med2image
nibabel
pillow
pydicom
and use the following generic
Dockerfile
FROM python:3
WORKDIR /usr/src/app
COPY requirements.txt ./
RUN pip install --no-cache-dir --upgrade pip \
&& pip install --no-cache-dir -r requirements.txt
COPY . .
CMD ["python", "./your-daemon-or-script.py"]
To be more precise, this is the approach suggested in the documentation of the Docker official image python, §. How to use this image
Some of the other answers/comments are suggesting to change your base image but if you want to keep your ubuntu 16.04 you can also simply specify your version of pip/python to use pip3 or pip3.5 like shown below.
FROM ubuntu:16.04
RUN apt-get update && apt-get install -y --no-install-recommends \
python3.5 \
python3-pip \
&& \
apt-get clean && \
rm -rf /var/lib/apt/lists/*
RUN pip3 install nibabel pydicom matplotlib pillow
RUN pip3 install med2image
» pip install docker
How to run python package inside a Docker container?
How to install a python module in a docker container - Stack Overflow
How to install a python package with all the dependencies into a Docker image? - Stack Overflow
Making library pip-installable vs. creating Docker image with the library inside
Videos
You can get bash from your container with this command:
docker-compose exec freqtrade bash
and then:
pip install finta
OR run only one command:
docker-compose exec freqtrade pip install finta
If the above solutions didn't work, You can run docker ps command and get container id of your container. Then
docker exec -it CONTAINER_ID bash
pip install finta
You need to make your own docker image that has finta installed. Luckily you can build on top of the standard freqtrade docker image.
First make a Dockerfile with these two lines in it
FROM freqtradeorg/freqtrade:stable
RUN pip install finta
Then build the image (calling the new image myfreqtrade) by running the command
docker build -t myfreqtrade .
Finally change the docker-compose.yml file to run your image by changing the line
image: freqtradeorg/freqtrade:stable
to
image: myfreqtrade
And that should be that.