Change the last line to:
temp = temp.append(data, ignore_index = True)
The reason we have to do this is because the append doesn't happen in place. The append method does not modify the data frame. It just returns a new data frame with the result of the append operation.
Edit:
Since writing this answer I have learned that you should never use DataFrame.append inside a loop because it leads to quadratic copying (see this answer).
What you should do instead is first create a list of data frames and then use pd.concat to concatenate them all in a single operation. Like this:
dfs = [] # an empty list to store the data frames
for file in file_list:
data = pd.read_json(file, lines=True) # read data frame from json file
dfs.append(data) # append the data frame to the list
temp = pd.concat(dfs, ignore_index=True) # concatenate all the data frames in the list.
This alternative should be considerably faster.
Answer from Juan Estevez on Stack OverflowChange the last line to:
temp = temp.append(data, ignore_index = True)
The reason we have to do this is because the append doesn't happen in place. The append method does not modify the data frame. It just returns a new data frame with the result of the append operation.
Edit:
Since writing this answer I have learned that you should never use DataFrame.append inside a loop because it leads to quadratic copying (see this answer).
What you should do instead is first create a list of data frames and then use pd.concat to concatenate them all in a single operation. Like this:
dfs = [] # an empty list to store the data frames
for file in file_list:
data = pd.read_json(file, lines=True) # read data frame from json file
dfs.append(data) # append the data frame to the list
temp = pd.concat(dfs, ignore_index=True) # concatenate all the data frames in the list.
This alternative should be considerably faster.
from pathlib import Path
import pandas as pd
paths = Path("/home/data").glob("*.json")
df = pd.DataFrame([pd.read_json(p, typ="series") for p in paths])
python - Reading multiple nested JSON files into Pandas DataFrame - Stack Overflow
Reading multiple JSON files and appending to a dataset using Python / Pandas - Stack Overflow
Python: Read several json files from a folder - Stack Overflow
python - how to import and read multiple json files in pandas? - Stack Overflow
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Note: Line separated json is now supported in read_json (since 0.19.0):
In [31]: pd.read_json('{"a":1,"b":2}\n{"a":3,"b":4}', lines=True)
Out[31]:
a b
0 1 2
1 3 4
or with a file/filepath rather than a json string:
pd.read_json(json_file, lines=True)
It's going to depend on the size of you DataFrames which is faster, but another option is to use str.join to smash your multi line "JSON" (Note: it's not valid json), into valid json and use read_json:
In [11]: '[%s]' % ','.join(test.splitlines())
Out[11]: '[{"a":1,"b":2},{"a":3,"b":4}]'
For this tiny example this is slower, if around 100 it's the similar, signicant gains if it's larger...
In [21]: %timeit pd.read_json('[%s]' % ','.join(test.splitlines()))
1000 loops, best of 3: 977 ยตs per loop
In [22]: %timeit l=[ json.loads(l) for l in test.splitlines()]; df = pd.DataFrame(l)
1000 loops, best of 3: 282 ยตs per loop
In [23]: test_100 = '\n'.join([test] * 100)
In [24]: %timeit pd.read_json('[%s]' % ','.join(test_100.splitlines()))
1000 loops, best of 3: 1.25 ms per loop
In [25]: %timeit l = [json.loads(l) for l in test_100.splitlines()]; df = pd.DataFrame(l)
1000 loops, best of 3: 1.25 ms per loop
In [26]: test_1000 = '\n'.join([test] * 1000)
In [27]: %timeit l = [json.loads(l) for l in test_1000.splitlines()]; df = pd.DataFrame(l)
100 loops, best of 3: 9.78 ms per loop
In [28]: %timeit pd.read_json('[%s]' % ','.join(test_1000.splitlines()))
100 loops, best of 3: 3.36 ms per loop
Note: of that time the join is surprisingly fast.
If you are trying to save memory, then reading the file a line at a time will be much more memory efficient:
with open('test.json') as f:
data = pd.DataFrame(json.loads(line) for line in f)
Also, if you import simplejson as json, the compiled C extensions included with simplejson are much faster than the pure-Python json module.
One option is listing all files in a directory with os.listdir and then finding only those that end in '.json':
import os, json
import pandas as pd
path_to_json = 'somedir/'
json_files = [pos_json for pos_json in os.listdir(path_to_json) if pos_json.endswith('.json')]
print(json_files) # for me this prints ['foo.json']
Now you can use pandas DataFrame.from_dict to read in the json (a python dictionary at this point) to a pandas dataframe:
montreal_json = pd.DataFrame.from_dict(many_jsons[0])
print montreal_json['features'][0]['geometry']
Prints:
{u'type': u'Point', u'coordinates': [-73.6051013, 45.5115944]}
In this case I had appended some jsons to a list many_jsons. The first json in my list is actually a geojson with some geo data on Montreal. I'm familiar with the content already so I print out the 'geometry' which gives me the lon/lat of Montreal.
The following code sums up everything above:
import os, json
import pandas as pd
# this finds our json files
path_to_json = 'json/'
json_files = [pos_json for pos_json in os.listdir(path_to_json) if pos_json.endswith('.json')]
# here I define my pandas Dataframe with the columns I want to get from the json
jsons_data = pd.DataFrame(columns=['country', 'city', 'long/lat'])
# we need both the json and an index number so use enumerate()
for index, js in enumerate(json_files):
with open(os.path.join(path_to_json, js)) as json_file:
json_text = json.load(json_file)
# here you need to know the layout of your json and each json has to have
# the same structure (obviously not the structure I have here)
country = json_text['features'][0]['properties']['country']
city = json_text['features'][0]['properties']['name']
lonlat = json_text['features'][0]['geometry']['coordinates']
# here I push a list of data into a pandas DataFrame at row given by 'index'
jsons_data.loc[index] = [country, city, lonlat]
# now that we have the pertinent json data in our DataFrame let's look at it
print(jsons_data)
for me this prints:
country city long/lat
0 Canada Montreal city [-73.6051013, 45.5115944]
1 Canada Toronto [-79.3849008, 43.6529206]
It may be helpful to know that for this code I had two geojsons in a directory name 'json'. Each json had the following structure:
{"features":
[{"properties":
{"osm_key":"boundary","extent":
[-73.9729016,45.7047897,-73.4734865,45.4100756],
"name":"Montreal city","state":"Quebec","osm_id":1634158,
"osm_type":"R","osm_value":"administrative","country":"Canada"},
"type":"Feature","geometry":
{"type":"Point","coordinates":
[-73.6051013,45.5115944]}}],
"type":"FeatureCollection"}
Iterating a (flat) directory is easy with the glob module
from glob import glob
for f_name in glob('foo/*.json'):
...
As for reading JSON directly into pandas, see here.