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python 3.x - Alternative for vpython for 3D simulations (molecular dynamics)? - Stack Overflow
Visual python(VPython) ..... a bit of guidance.
What are the differences between Python and Vpython?
python - pygame vs. VPython for visualizing PyODE - Stack Overflow
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» pip install vpython
Have look at
http://vispy.org
Python based module.
Also python module specifically for molecular visualization. https://pymol.org/2/
(Full disclosure: I'm the author of this library)
I suggest trying PhalcoPulse. It was designed to be a step up from VPython, directly addressing the limitations you mentioned. It provides full interactive camera controls (including pan, orbit, and zoom) and an easy-to-use API for simulations.
You just define a scene with setup() and loop() methods. Here's a quick example of a vibrating molecule:
Python
from phalcopulse import PhalcoPulseStudio, PhalcoPulseFX, gfx
import numpy as np
class VibratingDimer(PhalcoPulseFX):
def setup(self, ui_manager):
self.atom1_pos = np.array([-1.0, 0, 0])
self.atom2_pos = np.array([1.5, 0, 0])
self.atom2_vel = np.array([0.0, 0, 0])
self.rest_length = 2.0
self.k = 25.0 # Spring constant
def loop(self, delta_time):
# Update physics using Hooke's Law
direction = self.atom2_pos - self.atom1_pos
distance = np.linalg.norm(direction)
if distance > 0:
force = -self.k * (distance - self.rest_length) * (direction / distance)
self.atom2_vel += force * delta_time
self.atom2_pos += self.atom2_vel * delta_time
# Draw the scene
gfx.draw_sphere(radius=0.4, color=(0.8, 0.2, 0.2), center=self.atom1_pos)
gfx.draw_sphere(radius=0.4, color=(0.2, 0.6, 1.0), center=self.atom2_pos)
gfx.draw_cylinder(start=self.atom1_pos, end=self.atom2_pos, radius=0.1)
if __name__ == '__main__':
studio = PhalcoPulseStudio(scene_fx=VibratingDimer())
studio.run()
It's a pip-installable package and the source is on GitHub.
Install:
pip install phalcopulseRepo: https://github.com/PhalcoAi/PhalcoPulse
I can draw a lot of basic stuff in vpython like a cylinder,box,sphere etc. But m facing problems in drawing 2d figures like circle ,square ,arc etc.. Can any one lead me to some libraries or guide me a little bit . I am using the latest version of python.
Thank You.
So I recently wanted to get back into 3D graphics in python, but discovered that VPython has interesting behavior in python 3. I want to avoid having multiple python versions installed, but the VPython for python 3 is web based, and I need this to run standalone. A lot of people point to Jupyter, but this is also web based. All the alternatives I've found aren't 3D graphics in the same way VPython was, focusing instead on visualizations, which is not what I need.
Are there any non-web based 3D graphics libraries for Python 3 I can switch to?