Follow instructions for IntelliJ JD plugin. Or see an excerpt from the instructions below.

java -jar fernflower.jar [<source>]+ <destination>

+ means 1 or more times
<source>: file or directory with files to be decompiled. Directories are recursively scanned. Allowed file extensions are class, zip and jar.
<destination>: destination directory

Example:

java -jar fernflower.jar -hdc=0 -dgs=1 -rsy=1 -lit=1 c:\Temp\binary\ -e=c:\Java\rt.jar c:\Temp\source\

Be aware that if you pass it a ".jar" file for the source, it will create another ".jar" file in the destination, however, within the new ".jar" file, the files will be .java instead of .class files (it doesn't explode the jar).

UPDATE

People ask me: How do I get the fernflower.jar?

If you have any IntelliJ product installed, chances are that you already have the Fernflower decompiler on your computer. IntelliJ IDEA comes with Java Bytecode Decompiler plugin (bundled) which is a modern extension of Fernflower.

1. Locate the file in ${IntelliJ_INSTALL_DIR}\plugins\java-decompiler\lib\java-decompiler.jar (example: C:\Program Files\JetBrains\IntelliJ IDEA 2018\plugins\java-decompiler\lib).
2. Copy it somewhere and rename to fernflower.jar (optional).

3. This JAR is not executable, so we can't run it using java -jar. However something like this works:

   java -cp fernflower.jar org.jetbrains.java.decompiler.main.decompiler.ConsoleDecompiler [<source>]+ <destination>
   

   org.jetbrains.java.decompiler.main.decompiler.ConsoleDecompiler is the class that contains the main method to run the decompiler.

   Example:

   mkdir output_src
   java -cp fernflower.jar org.jetbrains.java.decompiler.main.decompiler.ConsoleDecompiler -hdc=0 -dgs=1 -rsy=1 -lit=1 ./input.jar ./output_src
   

If you don't have IntelliJ products installed, either download it now (available on jetbrains.com) or make your own decompiler executable from sources (available on Github).

use jd-gui and copy the source code in intellij. also normally with decomiplation your code will have multiple localobject and you have to deal with it